338 citations · 382 across the 14 of their papers we have counts for
14 papers
Efficient Chromosome Parallelization for Precision Medicine Genomic Workflows
Daniel Mas Montserrat, Ray Verma, Míriam Barrabés +3
Large-scale genomic workflows used in precision medicine can process datasets spanning tens to hundreds of gigabytes per sample, leading to high memory spikes, intensive disk I/O,…
A Tsallis-Entropy Lens on Genetic Variation
Margarita Geleta, Daniel Mas Montserrat, Alexander G. Ioannidis
We introduce an information-theoretic generalization of the fixation statistic, the Tsallis-order F-statistic, , which measures the fraction of Tsallis -entropy lost wi…
iLTM: Integrated Large Tabular Model
David Bonet, Marçal Comajoan Cara, Alvaro Calafell +2
Tabular data underpins decisions across science, industry, and public services. Despite rapid progress, advances in deep learning have not fully carried over to the tabular domain,…
Compressive Meta-Learning
Daniel Mas Montserrat, David Bonet, Maria Perera +2
The rapid expansion in the size of new datasets has created a need for fast and efficient parameter-learning techniques. Compressive learning is a framework that enables efficient…
Feature Shift Localization Network
Míriam Barrabés, Daniel Mas Montserrat, Kapal Dev +1
Feature shifts between data sources are present in many applications involving healthcare, biomedical, socioeconomic, financial, survey, and multi-sensor data, among others, where…
The Human Genomic Landscape of Oceania
Consuelo D. Quinto-Cortés, Carmina Barberena Jonas, Peter A. Gerlach +34
Oceania and Island Southeast Asia have a rich, yet understudied, human genomic landscape. This region encompasses some of the first areas inhabited by humans following the out-of-A…
HyperFast: Instant Classification for Tabular Data
David Bonet, Daniel Mas Montserrat, Xavier Giró-i-Nieto +1
Training deep learning models and performing hyperparameter tuning can be computationally demanding and time-consuming. Meanwhile, traditional machine learning methods like gradien…
Adversarial Learning for Feature Shift Detection and Correction
Miriam Barrabes, Daniel Mas Montserrat, Margarita Geleta +2
Data shift is a phenomenon present in many real-world applications, and while there are multiple methods attempting to detect shifts, the task of localizing and correcting the feat…
Ancestry-specific analyses of genome-wide data confirm the settlement sequence of Polynesia
Alexander G. Ioannidis, Javier Blanco-Portillo, Erika Hagelberg +7
By demonstrating the role that historical population replacements and waves of admixture have played around the world, the genetics work of Reich and colleagues has provided a para…
A deep learning classifier for local ancestry inference
Matthew Aguirre, Jan Sokol, Guhan Venkataraman +1
Local ancestry inference (LAI) identifies the ancestry of each segment of an individual's genome and is an important step in medical and population genetic studies of diverse cohor…
Addressing Ancestry Disparities in Genomic Medicine: A Geographic-aware Algorithm
Daniel Mas Montserrat, Arvind Kumar, Carlos Bustamante +1
With declining sequencing costs a promising and affordable tool is emerging in cancer diagnostics: genomics. By using association studies, genomic variants that predispose patients…
LAI-Net: Local-Ancestry Inference with Neural Networks
Daniel Mas Montserrat, Carlos Bustamante, Alexander Ioannidis
Local-ancestry inference (LAI), also referred to as ancestry deconvolution, provides high-resolution ancestry estimation along the human genome. In both research and industry, LAI…
Class-Conditional VAE-GAN for Local-Ancestry Simulation
Daniel Mas Montserrat, Carlos Bustamante, Alexander Ioannidis
Local ancestry inference (LAI) allows identification of the ancestry of all chromosomal segments in admixed individuals, and it is a critical step in the analysis of human genomes…
Ultra-Low-Power Superconductor Logic
Quentin P. Herr, Anna Y. Herr, Oliver T. Oberg +1
We have developed a new superconducting digital technology, Reciprocal Quantum Logic, that uses AC power carried on a transmission line, which also serves as a clock. Using simple…