52 citations · 106 across the 8 of their papers we have counts for
8 papers
Prediction of gene expression time series and structural analysis of gene regulatory networks using recurrent neural networks
Michele Monti, Jonathan Fiorentino, Edoardo Milanetti +2
Methods for time series prediction and classification of gene regulatory networks (GRNs) from gene expression data have been treated separately so far. The recent emergence of atte…
Structural analysis of SARS-CoV-2 and prediction of the human interactome
Andrea Vandelli, Michele Monti, Edoardo Milanetti +2
Specific elements of viral genomes regulate interactions within host cells. Here, we calculated the secondary structure content of >2500 coronaviruses and computed >100000 human pr…
In-Silico evidence for two receptors based strategy of SARS-CoV-2
Edoardo Milanetti, Mattia Miotto, Lorenzo Di Rienzo +3
We propose a novel numerical method able to determine efficiently and effectively the relationship of complementarity between portions of proteins surfaces. This innovative and gen…
Theory of circadian metabolism
Michele Monti, David K. Lubensky, Pieter Rein ten Wolde
Many organisms repartition their proteome in a circadian fashion in response to the daily nutrient changes in their environment. A striking example is provided by cyanobacteria, wh…
Robustness of clocks to input noise
Michele Monti, David K Lubensky, Pieter Rein ten Wolde
To estimate the time, many organisms, ranging from cyanobacteria to animals, employ a circadian clock which is based on a limit-cycle oscillator that can tick autonomously with a n…
Optimal entrainment of circadian clocks in the presence of noise
Michele Monti, David K. Lubensky, Pieter Rein ten Wolde
Circadian clocks are biochemical oscillators that allow organisms to estimate the time of the day. These oscillators are inherently noisy due to the discrete nature of the reactant…
The accuracy of telling time via oscillatory signals
Michele Monti, Pieter Rein ten Wolde
Circadian clocks are the central timekeepers of life, allowing cells to anticipate changes between day and night. Experiments in recent years have revealed that circadian clocks ca…
A modified galactose network model with implications for growth
Michele Monti, Marta R A Matos, Jeong-Mo Choi +2
The yeast galactose network has provided many insights into how eukaryotic gene circuits regulate metabolic function. However, there is currently no consensus model of the network…