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cond-mat.soft2005
Constructing thermodynamically consistent models with a non-ideal equation of state
Erkan Tuzel, Thomas Ihle, Daniel M. Kroll
A recently introduced particle-based model for fluid dynamics with continuous velocities is generalized to model fluids with excluded volume effects. This is achieved through the u…
cond-mat.soft2001
Evolutionary route to diploidy and sex
Erkan Tuzel, Volkan Sevim, Ayse Erzan
Using a bit-string model of evolution, we find a successful route to diploidy and sex in simple organisms. Allowing the sexually reproducing diploid individuals to also perform mit…
cond-mat.soft1999
Dissipative Dynamics and the Statistics of Energy States of a Hookean Model for Protein Folding
Erkan Tuzel, Ayse Erzan
A generic model of a random polypeptide chain, with discrete torsional degrees of freedom and Hookean springs connecting pairs of hydrophobic residues, reproduces the energy probab…