activity
20202026
most citedBERN2: an advanced neural biomedical named entity recognition and normalization tool

124 citations · 249 across the 22 of their papers we have counts for

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14 papers · 1 filter

cs.CL2024★ 7 cited

Rationale-Guided Retrieval Augmented Generation for Medical Question Answering

Jiwoong Sohn, Yein Park, Chanwoong Yoon +5

Large language models (LLM) hold significant potential for applications in biomedicine, but they struggle with hallucinations and outdated knowledge. While retrieval-augmented gene…

cs.CL2024

Learning from Negative Samples in Biomedical Generative Entity Linking

Chanhwi Kim, Hyunjae Kim, Sihyeon Park +3

Generative models have become widely used in biomedical entity linking (BioEL) due to their excellent performance and efficient memory usage. However, these models are usually trai…

cs.CL2024★ 4 cited

Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models

Minbyul Jeong, Jiwoong Sohn, Mujeen Sung +1

Recent proprietary large language models (LLMs), such as GPT-4, have achieved a milestone in tackling diverse challenges in the biomedical domain, ranging from multiple-choice ques…

cs.CL2023

KU-DMIS-MSRA at RadSum23: Pre-trained Vision-Language Model for Radiology Report Summarization

Gangwoo Kim, Hajung Kim, Lei Ji +7

In this paper, we introduce CheXOFA, a new pre-trained vision-language model (VLM) for the chest X-ray domain. Our model is initially pre-trained on various multimodal datasets wit…

cs.CL2023

Pre-training Intent-Aware Encoders for Zero- and Few-Shot Intent Classification

Mujeen Sung, James Gung, Elman Mansimov +5

Intent classification (IC) plays an important role in task-oriented dialogue systems. However, IC models often generalize poorly when training without sufficient annotated examples…

cs.CL2022

Optimizing Test-Time Query Representations for Dense Retrieval

Mujeen Sung, Jungsoo Park, Jaewoo Kang +2

Recent developments of dense retrieval rely on quality representations of queries and contexts from pre-trained query and context encoders. In this paper, we introduce TOUR (Test-T…

cs.CL2022★ 124 cited

BERN2: an advanced neural biomedical named entity recognition and normalization tool

Mujeen Sung, Minbyul Jeong, Yonghwa Choi +3

In biomedical natural language processing, named entity recognition (NER) and named entity normalization (NEN) are key tasks that enable the automatic extraction of biomedical enti…

cs.CL2021★ 5 cited

Improving Tagging Consistency and Entity Coverage for Chemical Identification in Full-text Articles

Hyunjae Kim, Mujeen Sung, Wonjin Yoon +2

This paper is a technical report on our system submitted to the chemical identification task of the BioCreative VII Track 2 challenge. The main feature of this challenge is that th…

cs.CL2021★ 1 cited

Can Language Models be Biomedical Knowledge Bases?

Mujeen Sung, Jinhyuk Lee, Sean Yi +3

Pre-trained language models (LMs) have become ubiquitous in solving various natural language processing (NLP) tasks. There has been increasing interest in what knowledge these LMs…

cs.CL2020★ 5 cited

Learning Dense Representations of Phrases at Scale

Jinhyuk Lee, Mujeen Sung, Jaewoo Kang +1

Open-domain question answering can be reformulated as a phrase retrieval problem, without the need for processing documents on-demand during inference (Seo et al., 2019). However,…

cs.CL2020★ 16 cited

Transferability of Natural Language Inference to Biomedical Question Answering

Minbyul Jeong, Mujeen Sung, Gangwoo Kim +4

Biomedical question answering (QA) is a challenging task due to the scarcity of data and the requirement of domain expertise. Pre-trained language models have been used to address…

cs.CL2020★ 7 cited

Answering Questions on COVID-19 in Real-Time

Jinhyuk Lee, Sean S. Yi, Minbyul Jeong +5

The recent outbreak of the novel coronavirus is wreaking havoc on the world and researchers are struggling to effectively combat it. One reason why the fight is difficult is due to…

cs.CL2020★ 8 cited

Biomedical Entity Representations with Synonym Marginalization

Mujeen Sung, Hwisang Jeon, Jinhyuk Lee +1

Biomedical named entities often play important roles in many biomedical text mining tools. However, due to the incompleteness of provided synonyms and numerous variations in their…

cs.CL2020★ 2 cited

Adversarial Subword Regularization for Robust Neural Machine Translation

Jungsoo Park, Mujeen Sung, Jinhyuk Lee +1

Exposing diverse subword segmentations to neural machine translation (NMT) models often improves the robustness of machine translation as NMT models can experience various subword…