2 papers
math.GT2026
Classification of (uncolored) bonded knots and links
Boštjan Gabrovšek, Matic Simonič, Wanda Niemyska
We present a systematic classification of uncolored bonded knots with singularity number at most seven. Bonded knots provide a topological model for closed protein chains with intr…
q-bio.BM2020
GLN -- a method to reveal unique properties of lasso type topology in proteins
Wanda Niemyska, Kenneth C. Millett, Joanna I. Sulkowska
Geometry and topology are the main factors that determine the functional properties of proteins. In this work, we show how to use the Gauss linking integral (GLN) in the form of a…