2 papers
cs.DS2020
Linear Time Construction of Indexable Founder Block Graphs
Veli Mäkinen, Bastien Cazaux, Massimo Equi +2
We introduce a compact pangenome representation based on an optimal segmentation concept that aims to reconstruct founder sequences from a multiple sequence alignment (MSA). Such f…
cs.DS2018
Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time
Tuukka Norri, Bastien Cazaux, Dmitry Kosolobov +1
Given a threshold and a set of haplotype sequences, each having length , the minimum segmentation problem for founder reconstruction…