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physics.chem-ph2025
Topological analysis reveals multiple pathways in molecular dynamics
Luca Donati, Surahit Chewle, Dominik St. Pierre +2
Molecular Dynamics simulations are essential tools for understanding the dynamic behavior of biomolecules, yet extracting meaningful molecular pathways from these simulations remai…
physics.chem-ph2024
Capturing the Macroscopic Behaviour of Molecular Dynamics with Membership Functions
Alexander Sikorski, Robert Julian Rabben, Surahit Chewle +1
Markov processes serve as foundational models in many scientific disciplines, such as molecular dynamics, and their simulation forms a common basis for analysis. While simulations…