activity
20182021
most citedOpenBioLink: A benchmarking framework for large-scale biomedical link prediction

78 citations · 162 across the 9 of their papers we have counts for

collaborators
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6 papers · 1 filter

cs.AI2020★ 7 cited

Benchmarking neural embeddings for link prediction in knowledge graphs under semantic and structural changes

Asan Agibetov, Matthias Samwald

Recently, link prediction algorithms based on neural embeddings have gained tremendous popularity in the Semantic Web community, and are extensively used for knowledge graph comple…

cs.AI2020★ 4 cited

Dividing the Ontology Alignment Task with Semantic Embeddings and Logic-based Modules

Ernesto Jiménez-Ruiz, Asan Agibetov, Jiaoyan Chen +2

Large ontologies still pose serious challenges to state-of-the-art ontology alignment systems. In this paper we present an approach that combines a neural embedding model and logic…

cs.AI2019★ 78 cited

OpenBioLink: A benchmarking framework for large-scale biomedical link prediction

Anna Breit, Simon Ott, Asan Agibetov +1

SUMMARY: Recently, novel machine-learning algorithms have shown potential for predicting undiscovered links in biomedical knowledge networks. However, dedicated benchmarks for meas…

cs.AI2018★ 5 cited

Global and local evaluation of link prediction tasks with neural embeddings

Asan Agibetov, Matthias Samwald

We focus our attention on the link prediction problem for knowledge graphs, which is treated herein as a binary classification task on neural embeddings of the entities. By compari…

cs.AI2018★ 7 cited

Breaking-down the Ontology Alignment Task with a Lexical Index and Neural Embeddings

Ernesto Jimenez-Ruiz, Asan Agibetov, Matthias Samwald +1

Large ontologies still pose serious challenges to state-of-the-art ontology alignment systems. In the paper we present an approach that combines a lexical index, a neural embedding…

cs.AI2018★ 1 cited

Fast and scalable learning of neuro-symbolic representations of biomedical knowledge

Asan Agibetov, Matthias Samwald

In this work we address the problem of fast and scalable learning of neuro-symbolic representations for general biological knowledge. Based on a recently published comprehensive bi…