78 citations · 83 across the 6 of their papers we have counts for
7 papers
Pancakes: Consistent Multi-Protocol Image Segmentation Across Biomedical Domains
Marianne Rakic, Siyu Gai, Etienne Chollet +2
A single biomedical image can be meaningfully segmented in multiple ways, depending on the desired application. For instance, a brain MRI can be segmented according to tissue types…
AtlasMorph: Learning conditional deformable templates for brain MRI
Marianne Rakic, Andrew Hoopes, S. Mazdak Abulnaga +3
Deformable templates, or atlases, are images that represent a prototypical anatomy for a population, and are often enhanced with probabilistic anatomical label maps. They are commo…
MultiMorph: On-demand Atlas Construction
S. Mazdak Abulnaga, Andrew Hoopes, Neel Dey +5
We present MultiMorph, a fast and efficient method for constructing anatomical atlases on the fly. Atlases capture the canonical structure of a collection of images and are essenti…
Tyche: Stochastic In-Context Learning for Medical Image Segmentation
Marianne Rakic, Hallee E. Wong, Jose Javier Gonzalez Ortiz +3
Existing learning-based solutions to medical image segmentation have two important shortcomings. First, for most new segmentation task, a new model has to be trained or fine-tuned.…
ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Biomedical Image
Hallee E. Wong, Marianne Rakic, John Guttag +1
Biomedical image segmentation is a crucial part of both scientific research and clinical care. With enough labelled data, deep learning models can be trained to accurately automate…
Anatomical Predictions using Subject-Specific Medical Data
Marianne Rakic, John Guttag, Adrian V. Dalca
Changes over time in brain anatomy can provide important insight for treatment design or scientific analyses. We present a method that predicts how a brain MRI for an individual wi…
Learning Conditional Deformable Templates with Convolutional Networks
Adrian V. Dalca, Marianne Rakic, John Guttag +1
We develop a learning framework for building deformable templates, which play a fundamental role in many image analysis and computational anatomy tasks. Conventional methods for te…