92 citations · 130 across the 9 of their papers we have counts for
3 papers · 1 filter
Computer-aided whole-cell design: taking a holistic approach by integrating synthetic with systems biology
Lucia Marucci, Matteo Barberis, Jonathan Karr +11
Computer-aided design for synthetic biology promises to accelerate the rational and robust engineering of biological systems; it requires both detailed and quantitative mathematica…
Exact Parallelization of the Stochastic Simulation Algorithm for Scalable Simulation of Large Biochemical Networks
Arthur P. Goldberg, David R. Jefferson, John A. P. Sekar +1
Comprehensive simulations of the entire biochemistry of cells have great potential to help physicians treat disease and help engineers design biological machines. But such simulati…
ObjTables: structured spreadsheets that promote data quality, reuse, and integration
Jonathan R. Karr, Wolfram Liebermeister, Arthur P. Goldberg +2
A central challenge in science is to understand how systems behaviors emerge from complex networks. This often requires aggregating, reusing, and integrating heterogeneous informat…