131 citations · 274 across the 7 of their papers we have counts for
7 papers
Higher-Order Cell Tracking Transformer
Jordão Bragantini, Ilan Theodoro, Loïc A. Royer
Reconstructing lineages from live-imaging microscopy requires linking cell detections across time, including through cell divisions. A common approach is to construct a candidate g…
WaveOrder: A differentiable wave-optical framework for scalable biological microscopy with diverse modalities
Talon Chandler, Ivan E. Ivanov, Gabriel Sturm +23
Correlative computational microscopy can accelerate imaging and modeling of cellular dynamics by relaxing trade-offs inherent to dynamic imaging. Existing computational microscopy…
Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps
Jordão Bragantini, Merlin Lange, Loïc Royer
In this work, we describe a method for large-scale 3D cell-tracking through a segmentation selection approach. The proposed method is effective at tracking cells across large micro…
Pycro-manager: open-source software for integrated microscopy hardware control and image processing
Henry Pinkard, Nico Stuurman, Laura Waller
μManager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments…
Image Deconvolution via Noise-Tolerant Self-Supervised Inversion
Hirofumi Kobayashi, Ahmet Can Solak, Joshua Batson +1
We propose a general framework for solving inverse problems in the presence of noise that requires no signal prior, no noise estimate, and no clean training data. We only require t…
Noise2Self: Blind Denoising by Self-Supervision
Joshua Batson, Loic Royer
We propose a general framework for denoising high-dimensional measurements which requires no prior on the signal, no estimate of the noise, and no clean training data. The only ass…