38 citations · 196 across the 15 of their papers we have counts for
16 papers
Overview of BioASQ 2026: The fourteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +18
This paper presents an overview of the fourteenth edition of the BioASQ challenge, organized in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2026. BioASQ i…
Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +17
This is an overview of the thirteenth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2025. BioASQ is a series of internati…
Overview of BioASQ 2024: The twelfth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +7
This is an overview of the twelfth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2024. BioASQ is a series of internationa…
iASiS: Towards Heterogeneous Big Data Analysis for Personalized Medicine
Anastasia Krithara, Fotis Aisopos, Vassiliki Rentoumi +14
The vision of IASIS project is to turn the wave of big biomedical data heading our way into actionable knowledge for decision makers. This is achieved by integrating data from disp…
Overview of BioASQ 2023: The eleventh BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +5
This is an overview of the eleventh edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2023. BioASQ is a series of internation…
Large-scale investigation of weakly-supervised deep learning for the fine-grained semantic indexing of biomedical literature
Anastasios Nentidis, Thomas Chatzopoulos, Anastasia Krithara +2
Objective: Semantic indexing of biomedical literature is usually done at the level of MeSH descriptors with several related but distinct biomedical concepts often grouped together…
Overview of BioASQ 2022: The tenth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou +5
This paper presents an overview of the tenth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2022. BioASQ is an ongoing ser…
Knowledge4COVID-19: A Semantic-based Approach for Constructing a COVID-19 related Knowledge Graph from Various Sources and Analysing Treatments' Toxicities
Ahmad Sakor, Samaneh Jozashoori, Emetis Niazmand +9
In this paper, we present Knowledge4COVID-19, a framework that aims to showcase the power of integrating disparate sources of knowledge to discover adverse drug effects caused by d…
Overview of BioASQ 2021: The ninth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou +4
Advancing the state-of-the-art in large-scale biomedical semantic indexing and question answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks where…
Overview of BioASQ 2020: The eighth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Anastasios Nentidis, Anastasia Krithara, Konstantinos Bougiatiotis +4
In this paper, we present an overview of the eighth edition of the BioASQ challenge, which ran as a lab in the Conference and Labs of the Evaluation Forum (CLEF) 2020. BioASQ is a…
Harvesting the Public MeSH Note field
Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas +1
In this document, we report an analysis of the Public MeSH Note field of the new descriptors introduced in the MeSH thesaurus between 2006 and 2020. The aim of this analysis was to…
What is all this new MeSH about? Exploring the semantic provenance of new descriptors in the MeSH thesaurus
Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas +1
The Medical Subject Headings (MeSH) thesaurus is a controlled vocabulary widely used in biomedical knowledge systems, particularly for semantic indexing of scientific literature. A…
Results of the seventh edition of the BioASQ Challenge
Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara +1
The results of the seventh edition of the BioASQ challenge are presented in this paper. The aim of the BioASQ challenge is the promotion of systems and methodologies through the or…
Beyond MeSH: Fine-Grained Semantic Indexing of Biomedical Literature based on Weak Supervision
Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas +1
In this work, we propose a method for the automated refinement of subject annotations in biomedical literature at the level of concepts. Semantic indexing and search of biomedical…
iASiS Open Data Graph: Automated Semantic Integration of Disease-Specific Knowledge
Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara +1
In biomedical research, unified access to up-to-date domain-specific knowledge is crucial, as such knowledge is continuously accumulated in scientific literature and structured res…
Evaluation-as-a-Service: Overview and Outlook
Allan Hanbury, Henning Müller, Krisztian Balog +11
Evaluation in empirical computer science is essential to show progress and assess technologies developed. Several research domains such as information retrieval have long relied on…