67 citations · 276 across the 11 of their papers we have counts for
12 papers
Scattering polarimetry enables correlative nerve fiber imaging and multimodal analysis
Franca auf der Heiden, Markus Axer, Katrin Amunts +1
Mapping the intricate network of nerve fibers is crucial for understanding brain function. Three-Dimensional Polarized Light Imaging (3D-PLI) and Computational Scattered Light Imag…
GORDA: Graph-based ORientation Distribution Analysis of SLI scatterometry Patterns of Nerve Fibres
Esteban Vaca, Miriam Menzel, Katrin Amunts +2
Scattered Light Imaging (SLI) is a novel approach for microscopically revealing the fibre architecture of unstained brain sections. The measurements are obtained by illuminating br…
Automated computation of nerve fibre inclinations from 3D polarised light imaging measurements of brain tissue
Miriam Menzel, Jan A. Reuter, David Gräßel +3
The method 3D polarised light imaging (3D-PLI) measures the birefringence of histological brain sections to determine the spatial course of nerve fibres (myelinated axons). While t…
Scatterometry Measurements with Scattered Light Imaging Enable New Insights into the Nerve Fiber Architecture of the Brain
Miriam Menzel, Marouan Ritzkowski, Jan André Reuter +3
The correct reconstruction of individual (crossing) nerve fibers is a prerequisite when constructing a detailed network model of the brain. The recently developed technique Scatter…
Independent Component Analysis for noise and artifact removal in Three-dimensional Polarized Light Imaging
Kai Benning, Miriam Menzel, Jan Reuter +1
In recent years, Independent Component Analysis (ICA) has successfully been applied to remove noise and artifacts in images obtained from Three-dimensional Polarized Light Imaging…
Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution
Miriam Menzel, Jan André Reuter, David Gräßel +4
For developing a detailed network model of the brain based on image reconstructions, it is necessary to spatially resolve crossing nerve fibers. The accuracy hereby depends on many…
Coherent Fourier scatterometry reveals nerve fiber crossings in the brain
Miriam Menzel, Silvania F. Pereira
Previous simulation studies by Menzel et al. [Phys. Rev. X 10, 021002 (2020)] have shown that scattering patterns of light transmitted through artificial nerve fiber constellations…
Diattenuation Imaging reveals different brain tissue properties
Miriam Menzel, Markus Axer, Katrin Amunts +2
When transmitting polarised light through histological brain sections, different types of diattenuation (polarisation-dependent attenuation of light) can be observed: In some brain…
Finite-Difference Time-Domain simulations of transmission microscopy enable a better interpretation of 3D nerve fiber architectures in the brain
Miriam Menzel, Markus Axer, Hans De Raedt +5
In many laboratories, conventional bright-field transmission microscopes are available to study the structure and organization principles of fibrous tissue samples, but they usuall…
Diattenuation of Brain Tissue and its Impact on 3D Polarized Light Imaging
Miriam Menzel, Julia Reckfort, Daniel Weigand +3
3D-Polarized Light Imaging (3D-PLI) reconstructs nerve fibers in histological brain sections by measuring their birefringence. This study investigates another effect caused by the…
Finite-Difference Time-Domain Simulation for Three-dimensional Polarized Light Imaging
Miriam Menzel, Markus Axer, Hans De Raedt +1
Three-dimensional Polarized Light Imaging (3D-PLI) is a promising technique to reconstruct the nerve fiber architecture of human post-mortem brains from birefringence measurements…
A Jones matrix formalism for simulating three-dimensional polarized light imaging of brain tissue
Miriam Menzel, Kristel Michielsen, Hans De Raedt +3
The neuroimaging technique three-dimensional polarized light imaging (3D-PLI) provides a high-resolution reconstruction of nerve fibres in human post-mortem brains. The orientation…