activity
20202024
most citedQuantitative Digital Microscopy with Deep Learning

130 citations · 345 across the 12 of their papers we have counts for

collaborators

12 papers

cond-mat.soft2024

Programmable self-assembly of core-shell ellipsoids at liquid interfaces

Jack Eatson, Susann Bauernfeind, Benjamin Midtvedt +9

Ellipsoidal particles confined at liquid interfaces exhibit complex self-assembly behaviour due to quadrupolar capillary interactions induced by meniscus deformation. These interac…

cond-mat.soft2024

Nanoalignment by Critical Casimir Torques

Gan Wang, Piotr Nowakowski, Nima Farahmand Bafi +7

The manipulation of microscopic objects requires precise and controllable forces and torques. Recent advances have led to the use of critical Casimir forces as a powerful tool, whi…

cond-mat.soft2023★ 32 cited

Quantitative evaluation of methods to analyze motion changes in single-particle experiments

Gorka Muñoz-Gil, Harshith Bachimanchi, Jesús Pineda +33

The analysis of live-cell single-molecule imaging experiments can reveal valuable information about the heterogeneity of transport processes and interactions between cell component…

physics.bio-ph2023★ 2 cited

Label-free optical quantification of material composition of suspended virus-gold nanoparticle complexes

Erik Olsén, Benjamin Midtvedt, Adrián González +7

The interaction between metallic and biological nanoparticles (NPs) is widely used in various biotechnology and biomedical applications. However, detailed characterization of this…

physics.optics2023★ 9 cited

Roadmap on Deep Learning for Microscopy

Giovanni Volpe, Carolina Wählby, Lei Tian +72

Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasin…

eess.IV2022★ 3 cited

Single-shot self-supervised particle tracking

Benjamin Midtvedt, Jesús Pineda, Fredrik Skärberg +8

Particle tracking is a fundamental task in digital microscopy. Recently, machine-learning approaches have made great strides in overcoming the limitations of more classical approac…

physics.bio-ph2022★ 14 cited

Microplankton life histories revealed by holographic microscopy and deep learning

Harshith Bachimanchi, Benjamin Midtvedt, Daniel Midtvedt +2

The marine microbial food web plays a central role in the global carbon cycle. Our mechanistic understanding of the ocean, however, is biased towards its larger constituents, while…

physics.data-an2022★ 83 cited

Geometric deep learning reveals the spatiotemporal fingerprint of microscopic motion

Jesús Pineda, Benjamin Midtvedt, Harshith Bachimanchi +4

The characterization of dynamical processes in living systems provides important clues for their mechanistic interpretation and link to biological functions. Thanks to recent advan…

cond-mat.soft2021★ 31 cited

Active droploids

Jens Grauer, Falko Schmidt, Jesus Pineda +4

Active matter comprises self-driven units, such as bacteria and synthetic microswimmers, that can spontaneously form complex patterns and assemble into functional microdevices. The…

physics.med-ph2020★ 40 cited

Extracting quantitative biological information from brightfield cell images using deep learning

Saga Helgadottir, Benjamin Midtvedt, Jesús Pineda +5

Quantitative analysis of cell structures is essential for biomedical and pharmaceutical research. The standard imaging approach relies on fluorescence microscopy, where cell struct…

eess.IV2020★ 130 cited

Quantitative Digital Microscopy with Deep Learning

Benjamin Midtvedt, Saga Helgadottir, Aykut Argun +3

Video microscopy has a long history of providing insights and breakthroughs for a broad range of disciplines, from physics to biology. Image analysis to extract quantitative inform…

physics.optics2020★ 1 cited

Holographic characterisation of subwavelength particles enhanced by deep learning

Benjamin Midtvedt, Erik Olsén, Fredrik Eklund +4

The characterisation of the physical properties of nanoparticles in their native environment plays a central role in a wide range of fields, from nanoparticle-enhanced drug deliver…