44 citations · 253 across the 39 of their papers we have counts for
9 papers · 1 filter
Assessing Neural Network Representations During Training Using Noise-Resilient Diffusion Spectral Entropy
Danqi Liao, Chen Liu, Benjamin W. Christensen +6
Entropy and mutual information in neural networks provide rich information on the learning process, but they have proven difficult to compute reliably in high dimensions. Indeed, i…
Directed Scattering for Knowledge Graph-based Cellular Signaling Analysis
Aarthi Venkat, Joyce Chew, Ferran Cardoso Rodriguez +3
Directed graphs are a natural model for many phenomena, in particular scientific knowledge graphs such as molecular interaction or chemical reaction networks that define cellular s…
DYMAG: Rethinking Message Passing Using Dynamical-systems-based Waveforms
Dhananjay Bhaskar, Xingzhi Sun, Yanlei Zhang +8
We present DYMAG, a graph neural network based on a novel form of message aggregation. Standard message-passing neural networks, which often aggregate local neighbors via mean-aggr…
A Flow Artist for High-Dimensional Cellular Data
Kincaid MacDonald, Dhananjay Bhaskar, Guy Thampakkul +5
We consider the problem of embedding point cloud data sampled from an underlying manifold with an associated flow or velocity. Such data arises in many contexts where static snapsh…
Manifold Filter-Combine Networks
David R. Johnson, Joyce A. Chew, Edward De Brouwer +3
In order to better understand manifold neural networks (MNNs), we introduce Manifold Filter-Combine Networks (MFCNs). Our filter-combine framework parallels the popular aggregate-c…
Inferring dynamic regulatory interaction graphs from time series data with perturbations
Dhananjay Bhaskar, Sumner Magruder, Edward De Brouwer +4
Complex systems are characterized by intricate interactions between entities that evolve dynamically over time. Accurate inference of these dynamic relationships is crucial for und…