16 citations · 25 across the 10 of their papers we have counts for
4 papers · 1 filter
Expected Density of Random Minimizers
Shay Golan, Arseny M. Shur
Minimizer schemes, or just minimizers, are a very important computational primitive in sampling and sketching biological strings. Assuming a fixed alphabet of size , a minimizer…
Hamming Distance Oracle
Itai Boneh, Dvir Fried, Shay Golan +1
In this paper, we present and study the \emph{Hamming distance oracle problem}. In this problem, the task is to preprocess two strings and of lengths and , respectiv…
String 2-Covers with No Length Restrictions
Itai Boneh, Shay Golan, Arseny Shur
A -cover of a string is a set of strings such that every index in is contained in an occurrence of at least one string . The existence of a -cover…
Hairpin Completion Distance Lower Bound
Itai Boneh, Dvir Fried, Shay Golan +1
Hairpin completion, derived from the hairpin formation observed in DNA biochemistry, is an operation applied to strings, particularly useful in DNA computing. Conceptually, a right…