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cs.DM2020
The Hydrostructure: a Universal Framework for Safe and Complete Algorithms for Genome Assembly
Massimo Cairo, Shahbaz Khan, Romeo Rizzi +3
Genome assembly is a fundamental problem in Bioinformatics, requiring to reconstruct a source genome from an assembly graph built from a set of reads (short strings sequenced from…
cs.DM2020
Genome assembly, from practice to theory: safe, complete and linear-time
Massimo Cairo, Romeo Rizzi, Alexandru I. Tomescu +1
Genome assembly asks to reconstruct an unknown string from many shorter substrings of it. Even though it is one of the key problems in Bioinformatics, it is generally lacking major…