387 citations · 509 across the 50 of their papers we have counts for
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AniRes2D: Anisotropic Residual-enhanced Diffusion for 2D MR Super-Resolution
Zejun Wu, Samuel W. Remedios, Blake E. Dewey +2
Anisotropic low-resolution (LR) magnetic resonance (MR) images are fast to obtain but hinder automated processing. We propose to use denoising diffusion probabilistic models (DDPMs…
Towards an accurate and generalizable multiple sclerosis lesion segmentation model using self-ensembled lesion fusion
Jinwei Zhang, Lianrui Zuo, Blake E. Dewey +4
Automatic multiple sclerosis (MS) lesion segmentation using multi-contrast magnetic resonance (MR) images provides improved efficiency and reproducibility compared to manual deline…
Harmonization-enriched domain adaptation with light fine-tuning for multiple sclerosis lesion segmentation
Jinwei Zhang, Lianrui Zuo, Blake E. Dewey +5
Deep learning algorithms utilizing magnetic resonance (MR) images have demonstrated cutting-edge proficiency in autonomously segmenting multiple sclerosis (MS) lesions. Despite the…
MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction
Zhangxing Bian, Shuwen Wei, Yihao Liu +6
Tagged magnetic resonance imaging (tMRI) has been employed for decades to measure the motion of tissue undergoing deformation. However, registration-based motion estimation from tM…
A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyond
Junyu Chen, Yihao Liu, Shuwen Wei +5
Deep learning technologies have dramatically reshaped the field of medical image registration over the past decade. The initial developments, such as regression-based and U-Net-bas…
Rapid Brain Meninges Surface Reconstruction with Layer Topology Guarantee
Peiyu Duan, Yuan Xue, Shuo Han +8
The meninges, located between the skull and brain, are composed of three membrane layers: the pia, the arachnoid, and the dura. Reconstruction of these layers can aid in studying v…
Optimal operating MR contrast for brain ventricle parcellation
Savannah P. Hays, Lianrui Zuo, Yuli Wang +3
Development of MR harmonization has enabled different contrast MRIs to be synthesized while preserving the underlying anatomy. In this paper, we use image harmonization to explore…
DrDisco: Deep Registration for Distortion Correction of Diffusion MRI with single phase-encoding
Zhangxing Bian, Muhan Shao, Aaron Carass +1
Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive way of imaging white matter tracts in the human brain. DW-MRIs are usually acquired using echo-planar imagi…
Label Propagation via Random Walk for Training Robust Thalamus Nuclei Parcellation Model from Noisy Annotations
Anqi Feng, Yuan Xue, Yuli Wang +7
Data-driven thalamic nuclei parcellation depends on high-quality manual annotations. However, the small size and low contrast changes among thalamic nuclei, yield annotations that…
Automated Ventricle Parcellation and Evan's Ratio Computation in Pre- and Post-Surgical Ventriculomegaly
Yuli Wang, Anqi Feng, Yuan Xue +6
Normal pressure hydrocephalus~(NPH) is a brain disorder associated with enlarged ventricles and multiple cognitive and motor symptoms. The degree of ventricular enlargement can be…
FastCod: Fast Brain Connectivity in Diffusion Imaging
Zhangxing Bian, Muhan Shao, Jiachen Zhuo +3
Connectivity information derived from diffusion-weighted magnetic resonance images~(DW-MRIs) plays an important role in studying human subcortical gray matter structures. However,…
A latent space for unsupervised MR image quality control via artifact assessment
Lianrui Zuo, Yuan Xue, Blake E. Dewey +3
Image quality control (IQC) can be used in automated magnetic resonance (MR) image analysis to exclude erroneous results caused by poorly acquired or artifact-laden images. Existin…
Segmenting thalamic nuclei from manifold projections of multi-contrast MRI
Chang Yan, Muhan Shao, Zhangxing Bian +6
The thalamus is a subcortical gray matter structure that plays a key role in relaying sensory and motor signals within the brain. Its nuclei can atrophy or otherwise be affected by…
DRIMET: Deep Registration for 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue
Zhangxing Bian, Fangxu Xing, Jinglun Yu +6
Tagged magnetic resonance imaging~(MRI) has been used for decades to observe and quantify the detailed motion of deforming tissue. However, this technique faces several challenges…