activity
20152022
most citedNuquantus: Machine learning software for the characterization and quantification of cell nuclei in complex immunofluorescent tissue images

14 citations · 37 across the 9 of their papers we have counts for

collaborators

9 papers

cs.LG2022★ 4 cited

Subtyping brain diseases from imaging data

Junhao Wen, Erdem Varol, Zhijian Yang +5

The imaging community has increasingly adopted machine learning (ML) methods to provide individualized imaging signatures related to disease diagnosis, prognosis, and response to t…

q-bio.NC2021

Multidimensional representations in late-life depression: convergence in neuroimaging, cognition, clinical symptomatology and genetics

Junhao Wen, Cynthia H. Y. Fu, Duygu Tosun +22

Late-life depression (LLD) is characterized by considerable heterogeneity in clinical manifestation. Unraveling such heterogeneity would aid in elucidating etiological mechanisms a…

cs.LG2020

MAGIC: Multi-scale Heterogeneity Analysis and Clustering for Brain Diseases

Junhao Wen, Erdem Varol, Ganesh Chand +2

There is a growing amount of clinical, anatomical and functional evidence for the heterogeneous presentation of neuropsychiatric and neurodegenerative diseases such as schizophreni…

stat.ML2020★ 7 cited

Sinkhorn EM: An Expectation-Maximization algorithm based on entropic optimal transport

Gonzalo Mena, Amin Nejatbakhsh, Erdem Varol +1

We study Sinkhorn EM (sEM), a variant of the expectation maximization (EM) algorithm for mixtures based on entropic optimal transport. sEM differs from the classic EM algorithm in…

stat.AP2019★ 1 cited

Temporal Wasserstein non-negative matrix factorization for non-rigid motion segmentation and spatiotemporal deconvolution

Erdem Varol, Amin Nejatbakhsh, Conor McGrory

Motion segmentation for natural images commonly relies on dense optic flow to yield point trajectories which can be grouped into clusters through various means including spectral c…

eess.SP2019

Wasserstein total variation filtering

Erdem Varol, Amin Nejatbakhsh

In this paper, we expand upon the theory of trend filtering by introducing the use of the Wasserstein metric as a means to control the amount of spatiotemporal variation in filtere…