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q-bio.PE2025
Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance
Lena Collienne, Frederick A Matsen
Tree rearrangements such as Nearest Neighbor Interchange (NNI) and Subtree Prune and Regraft (SPR) are commonly used to explore phylogenetic treespace. Computing distances based on…
q-bio.PE2021
The Geometry of the space of Discrete Coalescent Trees
Lena Collienne, Kieran Elmes, Mareike Fischer +2
Computational inference of dated evolutionary histories relies upon various hypotheses about RNA, DNA, and protein sequence mutation rates. Using mutation rates to infer these date…