52 citations · 116 across the 17 of their papers we have counts for
17 papers
VARIANT: Web Server for Decoding and Analyzing Viral Mutations at Genome and Protein Levels
Rui Wang, Xuhang Dai, Xin Cao +3
A comprehensive analysis of viral mutations is essential for understanding viral evolution, disease epidemiology, diagnosis, drug resistance, etc. However, challenges remain in cap…
Evolutionary trend of SARS-CoV-2 inferred by the homopolymeric nucleotide repeats
Changchuan Yin
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of the current global COVID-19 pandemic, in which millions of lives have been lost. Understandin…
Emerging vaccine-breakthrough SARS-CoV-2 variants
Rui Wang, Jiahui Chen, Yuta Hozumi +2
The recent global surge in COVID-19 infections has been fueled by new SARS-CoV-2 variants, namely Alpha, Beta, Gamma, Delta, etc. The molecular mechanism underlying such surge is e…
Multi-Factors Aware Dual-Attentional Knowledge Tracing
Moyu Zhang, Xinning Zhu, Chunhong Zhang +3
With the increasing demands of personalized learning, knowledge tracing has become important which traces students' knowledge states based on their historical practices. Factor ana…
UMAP-assisted -means clustering of large-scale SARS-CoV-2 mutation datasets
Yuta Hozumi, Rui Wang, Changchuan Yin +1
Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has a worldwide devastating effect. The understanding of evolution and tr…
Inverted repeats in coronavirus SARS-CoV-2 genome and implications in evolution
Changchuan Yin, Stephen S. -T. Yau
The coronavirus disease (COVID-19) pandemic, caused by the coronavirus SARS-CoV-2, has caused 60 millions of infections and 1.38 millions of fatalities. Genomic analysis of SARS-Co…
Host immune response driving SARS-CoV-2 evolution
Rui Wang, Yuta Hozumi, Yong-Hui Zheng +2
The transmission and evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are of paramount importance to the controlling and combating of coronavirus disease 2…
Characterizing SARS-CoV-2 mutations in the United States
Rui Wang, Jiahui Chen, Kaifu Gao +3
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been mutating since it was first sequenced in early January 2020. The genetic variants have developed into a fe…
Decoding asymptomatic COVID-19 infection and transmission
Rui Wang, Yuta Hozumi, Changchuan Yin +1
Coronavirus disease 2019 (COVID-19) is a continuously devastating public health and the world economy. One of the major challenges in controlling the COVID-19 outbreak is its asymp…
Dinucleotide repeats in coronavirus SARS-CoV-2 genome: evolutionary implications
Changchuan Yin
The ongoing global pandemic of infection disease COVID-19 caused by the 2019 novel coronavirus (SARS-COV-2, formerly 2019-nCoV) presents critical threats to public health and the e…
Mutations on COVID-19 diagnostic targets
Rui Wang, Yuta Hozumi, Changchuan Yin +1
Effective, sensitive, and reliable diagnostic reagents are of paramount importance for combating the ongoing coronavirus disease 2019 (COVID-19) pandemic at a time there is no prev…
Decoding SARS-CoV-2 transmission, evolution and ramification on COVID-19 diagnosis, vaccine, and medicine
Rui Wang, Yuta Hozumi, Changchuan Yin +1
Tremendous effort has been given to the development of diagnostic tests, preventive vaccines, and therapeutic medicines for coronavirus disease 2019 (COVID-19) caused by severe acu…
Genotyping coronavirus SARS-CoV-2: methods and implications
Changchuan Yin
The emerging global infectious COVID-19 coronavirus disease by novel Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) presents critical threats to global public health…
A novel algorithm to get the Fourier power spectra of a real sequence
Jiasong Wang, Changchuan Yin
For a real sequence of length of m = nl, we may deduce its congruence derivative sequence with length of l. The discrete Fourier transform of original sequence can be calculated by…
Whole genome single nucleotide polymorphism genotyping of Staphylococcus aureus
Changchuan Yin, Stephen S. -T. Yau
Next-generation sequencing technology enables routine detection of bacterial pathogens for clinical diagnostics and genetic research. Whole genome sequencing has been of importance…
A Fast Algorithm for Computing the Fourier Spectrum of a Fractional Period
Jiasong Wang, Changchuan Yin
The Fourier spectrum at a fractional period is often examined when extracting features from biological sequences and time series. It reflects the inner information structure of the…
A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform
Changchuan Yin, Xuemeng E. Yin, Jiasong Wang
Alignment-free sequence analysis approaches provide important alternatives over multiple sequence alignment (MSA) in biological sequence analysis because alignment-free approaches…