2 citations · 7 across the 5 of their papers we have counts for
6 papers
Homogeneity and heterogeneity of functional element composition of genome units across human and seven model organisms
Yanying Wu
Is a chromosome a miniature of its genome, with the same mix of functional elements as the whole? We ask this of eight annotated genomes: human, mouse, zebrafish, Caenorhabditis el…
A Category of Genes
Yanying Wu
Understanding how genes interact and relate to each other is a fundamental question in biology. However, current practices for describing these relationships, such as drawing diagr…
Applied Category Theory for Genomics -- An Initiative
Yanying Wu
The ultimate secret of all lives on earth is hidden in their genomes -- a totality of DNA sequences. We currently know the whole genome sequence of many organisms, while our unders…
Gene ologs: a categorical framework for Gene Ontology
Yanying Wu
Gene Ontology (GO) is the most important resource for gene function annotation. It provides a way to unify biological knowledge across different species via a dynamic and controlle…
An Open Petri Net Implementation of Gene Regulatory Networks
Yanying Wu
Gene regulatory network (GRN) plays a central role in system biology and genomics. It provides a promising way to model and study complex biological processes. Several computationa…
A Categorical Compositional Distributional Modelling for the Language of Life
Yanying Wu, Quanlong Wang
The Categorical Compositional Distributional (DisCoCat) Model is a powerful mathematical model for composing the meaning of sentences in natural languages. Since we can think of bi…