activity
20162023
most citedQuASeR -- Quantum Accelerated De Novo DNA Sequence Reconstruction

65 citations · 202 across the 26 of their papers we have counts for

collaborators

26 papers

cs.RO2023

Learning-enabled multi-modal motion prediction in urban environments

Vinicius Trentin, Chenxu Ma, Jorge Villagra +1

Motion prediction is a key factor towards the full deployment of autonomous vehicles. It is fundamental in order to assure safety while navigating through highly interactive comple…

cs.DB2023★ 1 cited

SaLoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs

Seongyeon Park, Hajin Kim, Tanveer Ahmad +5

Sequence alignment forms an important backbone in many sequencing applications. A commonly used strategy for sequence alignment is an approximate string matching with a two-dimensi…

cs.PL2022★ 1 cited

A Toolchain for Streaming Dataflow Accelerator Designs for Big Data Analytics: Defining an IR for Composable Typed Streaming Dataflow Designs

Matthijs A. Reukers

Tydi is an open specification for streaming dataflow designs in digital circuits, allowing designers to express how composite and variable-length data structures are transferred ov…

cs.AR2022★ 3 cited

Tydi-lang: A Language for Typed Streaming Hardware

Yongding Tian, Matthijs A. Reukers, Zaid Al-Ars +4

Transferring composite data structures with variable-length fields often requires designing unique protocols, causing incompatibility issues and decreased collaboration among hardw…

quant-ph2022★ 6 cited

QPack Scores: Quantitative performance metrics for application-oriented quantum computer benchmarking

Huub Donkers, Koen Mesman, Zaid Al-Ars +1

This paper presents the benchmark score definitions of QPack, an application-oriented cross-platform benchmarking suite for quantum computers and simulators, which makes use of sca…

cs.DC2022

Memory-Disaggregated In-Memory Object Store Framework for Big Data Applications

Robin Abrahamse, Akos Hadnagy, Zaid Al-Ars

The concept of memory disaggregation has recently been gaining traction in research. With memory disaggregation, data center compute nodes can directly access memory on adjacent no…

cs.DC2022★ 1 cited

Benchmarking Apache Arrow Flight -- A wire-speed protocol for data transfer, querying and microservices

Tanveer Ahmad, Zaid Al Ars, H. Peter Hofstee

Moving structured data between different big data frameworks and/or data warehouses/storage systems often cause significant overhead. Most of the time more than 80\% of the total t…

cs.CV2022★ 5 cited

Towards an Automatic Diagnosis of Peripheral and Central Palsy Using Machine Learning on Facial Features

C. V. Vletter, H. L. Burger, H. Alers +2

Central palsy is a form of facial paralysis that requires urgent medical attention and has to be differentiated from other, similar conditions such as peripheral palsy. To aid in f…

quant-ph2021★ 1 cited

QKSA: Quantum Knowledge Seeking Agent -- resource-optimized reinforcement learning using quantum process tomography

Aritra Sarkar, Zaid Al-Ars, Harshitta Gandhi +1

In this research, we extend the universal reinforcement learning (URL) agent models of artificial general intelligence to quantum environments. The utility function of a classical…

cs.DC2021★ 18 cited

DFL: High-Performance Blockchain-Based Federated Learning

Yongding Tian, Zhuoran Guo, Jiaxuan Zhang +1

Many researchers have proposed replacing the aggregation server in federated learning with a blockchain system to improve privacy, robustness, and scalability. In this approach, cl…

cs.CV2021★ 2 cited

An Attention Module for Convolutional Neural Networks

Zhu Baozhou, Peter Hofstee, Jinho Lee +1

Attention mechanism has been regarded as an advanced technique to capture long-range feature interactions and to boost the representation capability for convolutional neural networ…

cs.CV2021★ 3 cited

AutoReCon: Neural Architecture Search-based Reconstruction for Data-free Compression

Baozhou Zhu, Peter Hofstee, Johan Peltenburg +2

Data-free compression raises a new challenge because the original training dataset for a pre-trained model to be compressed is not available due to privacy or transmission issues.…

cs.DC2021★ 8 cited

GPU Acceleration of 3D Agent-Based Biological Simulations

Ahmad Hesam, Lukas Breitwieser, Fons Rademakers +1

Researchers in biology are faced with the tough challenge of developing high-performance computer simulations of their increasingly complex agent-based models. BioDynaMo is an open…

cs.ET2021★ 1 cited

QPack: Quantum Approximate Optimization Algorithms as universal benchmark for quantum computers

Koen Mesman, Zaid Al-Ars, Matthias Möller

In this paper, we present QPack, a universal benchmark for Noisy Intermediate-Scale Quantum (NISQ) computers based on Quantum Approximate Optimization Algorithms (QAOA). Unlike oth…

cs.LG2021★ 1 cited

Fidel: Reconstructing Private Training Samples from Weight Updates in Federated Learning

David Enthoven, Zaid Al-Ars

With the increasing number of data collectors such as smartphones, immense amounts of data are available. Federated learning was developed to allow for distributed learning on a ma…

cs.LG2020

Privacy-Preserving Object Detection & Localization Using Distributed Machine Learning: A Case Study of Infant Eyeblink Conditioning

Stefan Zwaard, Henk-Jan Boele, Hani Alers +3

Distributed machine learning is becoming a popular model-training method due to privacy, computational scalability, and bandwidth capacities. In this work, we explore scalable dist…

cs.CV2020★ 1 cited

SoFAr: Shortcut-based Fractal Architectures for Binary Convolutional Neural Networks

Zhu Baozhou, Peter Hofstee, Jinho Lee +1

Binary Convolutional Neural Networks (BCNNs) can significantly improve the efficiency of Deep Convolutional Neural Networks (DCNNs) for their deployment on resource-constrained pla…

cs.CV2020★ 7 cited

Towards Lossless Binary Convolutional Neural Networks Using Piecewise Approximation

Baozhou Zhu, Zaid Al-Ars, Wei Pan

Binary Convolutional Neural Networks (CNNs) can significantly reduce the number of arithmetic operations and the size of memory storage, which makes the deployment of CNNs on mobil…

cs.CV2020★ 3 cited

NASB: Neural Architecture Search for Binary Convolutional Neural Networks

Baozhou Zhu, Zaid Al-Ars, Peter Hofstee

Binary Convolutional Neural Networks (CNNs) have significantly reduced the number of arithmetic operations and the size of memory storage needed for CNNs, which makes their deploym…

cs.CV2020★ 1 cited

Real-Time Face and Landmark Localization for Eyeblink Detection

Paul Bakker, Henk-Jan Boele, Zaid Al-Ars +1

Pavlovian eyeblink conditioning is a powerful experiment used in the field of neuroscience to measure multiple aspects of how we learn in our daily life. To track the movement of t…

cs.CE2020★ 54 cited

BioDynaMo: a general platform for scalable agent-based simulation

Lukas Breitwieser, Ahmad Hesam, Jean de Montigny +10

Motivation: Agent-based modeling is an indispensable tool for studying complex biological systems. However, existing simulators do not always take full advantage of modern hardware…

quant-ph2020

Quantum circuit design for universal distribution using a superposition of classical automata

Aritra Sarkar, Zaid Al-Ars, Koen Bertels

In this research, we present a quantum circuit design and implementation for a parallel universal linear bounded automata. This circuit is able to accelerate the inference of algor…

quant-ph2020★ 65 cited

QuASeR -- Quantum Accelerated De Novo DNA Sequence Reconstruction

Aritra Sarkar, Zaid Al-Ars, Koen Bertels

In this article, we present QuASeR, a reference-free DNA sequence reconstruction implementation via de novo assembly on both gate-based and quantum annealing platforms. Each one of…

cs.CR2020★ 1 cited

An Overview of Federated Deep Learning Privacy Attacks and Defensive Strategies

David Enthoven, Zaid Al-Ars

With the increased attention and legislation for data-privacy, collaborative machine learning (ML) algorithms are being developed to ensure the protection of private data used for…