38 citations · 40 across the 4 of their papers we have counts for
5 papers
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome Analysis
Can Firtina, Kamlesh Pillai, Gurpreet S. Kalsi +10
Profile hidden Markov models (pHMMs) are widely employed in various bioinformatics applications to identify similarities between biological sequences, such as DNA or protein sequen…
SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping
Damla Senol Cali, Konstantinos Kanellopoulos, Joel Lindegger +15
A critical step of genome sequence analysis is the mapping of sequenced DNA fragments (i.e., reads) collected from an individual to a known linear reference genome sequence (i.e.,…
Preprocessing power weighted shortest path data using a s-Well Separated Pair Decomposition
Gurpreet S. Kalsi, Steven B. Damelin
For 0, we consider an algorithm that computes all -well separated pairs in certain point sets in , . For an integer , we also consider an…
AccSS3D: Accelerator for Spatially Sparse 3D DNNs
Om Ji Omer, Prashant Laddha, Gurpreet S Kalsi +6
Semantic understanding and completion of real world scenes is a foundational primitive of 3D Visual perception widely used in high-level applications such as robotics, medical imag…
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Damla Senol Cali, Gurpreet S. Kalsi, Zülal Bingöl +13
Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. U…