269 citations · 752 across the 16 of their papers we have counts for
Showing 2017Show all
2 papers · 1 filter
q-bio.GN2017★ 130 cited
GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies
Jeremie S. Kim, Damla Senol Cali, Hongyi Xin +7
Motivation: Seed location filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to id…
q-bio.GN2017★ 269 cited
Nanopore Sequencing Technology and Tools for Genome Assembly: Computational Analysis of the Current State, Bottlenecks and Future Directions
Damla Senol Cali, Jeremie S. Kim, Saugata Ghose +2
Nanopore sequencing technology has the potential to render other sequencing technologies obsolete with its ability to generate long reads and provide portability. However, high err…