3 papers
cond-mat.soft2023
ANNaMo: Coarse-grained modelling for folding and assembly of RNA and DNA systems
F. Tosti Guerra, E. Poppleton, P. Šulc +1
The folding of RNA and DNA strands plays crucial roles in biological systems and bionanotechnology. However, studying these processes with high-resolution numerical models is beyon…
q-bio.BM2020
Coarse-Grained Nucleic Acid-Protein Model for Hybrid Nanotechnology
Jonah Procyk, Erik Poppleton, Petr Šulc
The emerging field of hybrid DNA - protein nanotechnology brings with it the potential for many novel materials which combine the addressability of DNA nanotechnology with versatil…
cond-mat.soft2020
The oxDNA coarse-grained model as a tool to simulate DNA origami
Jonathan P. K. Doye, Hannah Fowler, Domen Prešern +12
This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.