18 citations · 18 across the 2 of their papers we have counts for
3 papers
q-bio.PE2020
Phylosymmetric algebras: mathematical properties of a new tool in phylogenetics
Michael Hendriksen, Julia A. Shore
In phylogenetics it is of interest for rate matrix sets to satisfy closure under matrix multiplication as this makes finding the set of corresponding transition matrices possible w…
q-bio.PE2019★ 18 cited
The ancient Operational Code is embedded in the amino acid substitution matrix and aaRS phylogenies
Julia A. Shore, Barbara R. Holland, Jeremy G. Sumner +2
The underlying structure of the canonical amino acid substitution matrix (aaSM) is examined by considering stepwise improvements in the differential recognition of amino acids acco…
q-bio.PE2018
The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives
Julia A. Shore, Jeremy G. Sumner, Barbara R. Holland
A matrix Lie algebra is a linear space of matrices closed under the operation . The "Lie closure" of a set of matrices is the smallest matrix Lie algebra which co…