19 citations · 19 across the 3 of their papers we have counts for
4 papers
Extreme-scale many-against-many protein similarity search
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi +7
Similarity search is one of the most fundamental computations that are regularly performed on ever-increasing protein datasets. Scalability is of paramount importance for uncoverin…
Parallel Algorithms for Densest Subgraph Discovery Using Shared Memory Model
B. D. M. De Zoysa, Y. A. M. M. A. Ali, M. D. I. Maduranga +3
The problem of finding dense components of a graph is a widely explored area in data analysis, with diverse applications in fields and branches of study including community mining,…
Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi +3
Identifying similar protein sequences is a core step in many computational biology pipelines such as detection of homologous protein sequences, generation of similarity protein gra…
The Parallelism Motifs of Genomic Data Analysis
Katherine Yelick, Aydin Buluc, Muaaz Awan +11
Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and shar…