5 citations · 9 across the 4 of their papers we have counts for
5 papers
The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences
Sandun Rajapaksa, Lloyd Allison, Peter J. Stuckey +2
A complete time-parameterized statistical model quantifying the divergent evolution of protein structures in terms of the patterns of conservation of their secondary structures is…
Bridging the Gaps in Statistical Models of Protein Alignment
Dinithi Sumanaweera, Lloyd Allison, Arun S. Konagurthu
This work demonstrates how a complete statistical model quantifying the evolution of pairs of aligned proteins can be constructed from a time-parameterised substitution matrix and…
On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations
Lloyd Allison, Arun Konagurthu, Daniel Schmidt
A universal code for the (positive) integers can be used to store or compress a sequence of integers. Every universal code implies a probability distribution on integers. This impl…
Statistical Inference of a canonical dictionary of protein substructural fragments
Arun S. Konagurthu, Arthur M. Lesk, David Abramson +2
Proteins are biomolecules of life. They fold into a great variety of three-dimensional (3D) shapes. Underlying these folding patterns are many recurrent structural fragments or bui…
An information measure for comparing top lists
Arun Konagurthu, James Collier
Comparing the top elements between two or more ranked results is a common task in many contexts and settings. A few measures have been proposed to compare top lists with at…