2 papers
q-bio.QM2023
The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences
Sandun Rajapaksa, Lloyd Allison, Peter J. Stuckey +2
A complete time-parameterized statistical model quantifying the divergent evolution of protein structures in terms of the patterns of conservation of their secondary structures is…
cs.LG2020
Bridging the Gaps in Statistical Models of Protein Alignment
Dinithi Sumanaweera, Lloyd Allison, Arun S. Konagurthu
This work demonstrates how a complete statistical model quantifying the evolution of pairs of aligned proteins can be constructed from a time-parameterised substitution matrix and…