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John D. Chodera

3 papers here

Matching runs newest-first, so older work may not be attached to this profile yet.

author position
  • middle author2
  • last author1

Across the 3 of 3 papers where every author was matched, so the position is known.

fields
  • physics.chem-ph2
  • cs.LG1
ORCID 0000-0003-0542-119X

identity via Semantic Scholar / OpenAlex

activity
20222024
most citedSPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentials

13 citations · 26 across the 3 of their papers we have counts for

collaborators

3 papers

physics.chem-ph2024★ 1 cited

Enhancing Protein-Ligand Binding Affinity Predictions using Neural Network Potentials

Francesc Sabanes Zariquiey, Raimondas Galvelis, Emilio Gallicchio +3

This letter gives results on improving protein-ligand binding affinity predictions based on molecular dynamics simulations using machine learning potentials with a hybrid neural ne…

cs.LG2023★ 12 cited

Spatial Attention Kinetic Networks with E(n)-Equivariance

Yuanqing Wang, John D. Chodera

Neural networks that are equivariant to rotations, translations, reflections, and permutations on n-dimensional geometric space have shown promise in physical modeling for tasks su…

physics.chem-ph2022★ 13 cited

SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentials

Peter Eastman, Pavan Kumar Behara, David L. Dotson +9

Machine learning potentials are an important tool for molecular simulation, but their development is held back by a shortage of high quality datasets to train them on. We describe…

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Not affiliated with arXiv. Researcher data from Semantic Scholar (ODC-BY) and OpenAlex.