2 papers
q-bio.BM2025
Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection Layers
Yingheng Wang, Zichen Wang, Gil Sadeh +4
Self-supervised training of language models (LMs) has seen great success for protein sequences in learning meaningful representations and for generative drug design. Most protein L…
cs.LG2024
Pushing the Limits of All-Atom Geometric Graph Neural Networks: Pre-Training, Scaling and Zero-Shot Transfer
Zihan Pengmei, Zhengyuan Shen, Zichen Wang +2
Constructing transferable descriptors for conformation representation of molecular and biological systems finds numerous applications in drug discovery, learning-based molecular dy…