2 papers
cs.SE2025
Snakemaker: Seamlessly transforming ad-hoc analyses into sustainable Snakemake workflows with generative AI
Marco Masera, Alessandro Leone, Johannes Köster +1
Reproducibility and sustainability present significant challenges in bioinformatics software development, where rapidly evolving tools and complex workflows often result in short-l…
q-bio.QM2025
3plex Web: An Interactive Platform for RNA:DNA Triplex Prediction and Analysis
Marco Masera, Chiara Cicconetti, Francesca Ferrero +2
Summary: Long non-coding RNAs (lncRNAs) exert their functions by cooperating with other molecules including proteins and DNA. Triplexes, formed through the interaction between a si…