2 papers
cs.DS2025
Scalable and Interpretable Identification of Minimal Undesignable RNA Structure Motifs with Rotational Invariance
Tianshuo Zhou, Wei Yu Tang, Apoorv Malik +2
RNA design aims to find a sequence that folds with highest probability into a designated target structure. However, certain structures are undesignable, meaning no sequence can fol…
q-bio.BM2024
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments
Apoorv Malik, Liang Zhang, Milan Gautam +5
Predicting the consensus structure of a set of aligned RNA homologs is a convenient method to find conserved structures in an RNA genome, which has many applications including vira…