49 citations · 165 across the 22 of their papers we have counts for
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q-bio.GN2005★ 3 cited
Parametric inference of recombination in HIV genomes
Niko Beerenwinkel, Colin N. Dewey, Kevin M. Woods
Recombination is an important event in the evolution of HIV. It affects the global spread of the pandemic as well as evolutionary escape from host immune response and from drug the…
q-bio.GN2005★ 49 cited
Parametric Alignment of Drosophila Genomes
Colin Dewey, Peter Huggins, Kevin Woods +2
The classic algorithms of Needleman--Wunsch and Smith--Waterman find a maximum a posteriori probability alignment for a pair hidden Markov model (PHMM). In order to process large g…