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20002013
most citedSOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner

431 citations · 513 across the 10 of their papers we have counts for

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5 papers · 1 filter

cs.DS2011★ 3 cited

Edit Distance to Monotonicity in Sliding Windows

Ho-Leung Chan, Tak-Wah Lam, Lap-Kei Lee +3

Given a stream of items each associated with a numerical value, its edit distance to monotonicity is the minimum number of items to remove so that the remaining items are non-decre…

cs.DS2009★ 1 cited

Continuous Monitoring of Distributed Data Streams over a Time-based Sliding Window

Ho-Leung Chan, Tak-Wah Lam, Lap-Kei Lee +1

The past decade has witnessed many interesting algorithms for maintaining statistics over a data stream. This paper initiates a theoretical study of algorithms for monitoring distr…

cs.DS2009★ 6 cited

Nonclairvoyant Speed Scaling for Flow and Energy

Ho-Leung Chan, Jeff Edmonds, Tak-Wah Lam +3

We study online nonclairvoyant speed scaling to minimize total flow time plus energy. We first consider the traditional model where the power function is P (s) = s\^\propto. We giv…

cs.DS2002

Improved Phylogeny Comparisons: Non-Shared Edges Nearest Neighbor Interchanges, and Subtree Transfers

Wing-Kai Hon, Ming-Yang Kao, Tak-Wah Lam +2

The number of the non-shared edges of two phylogenies is a basic measure of the dissimilarity between the phylogenies. The non-shared edges are also the building block for approxim…

cs.DS2000

A Decomposition Theorem for Maximum Weight Bipartite Matchings

Ming-Yang Kao, Tak-Wah Lam, Wing-Kin Sung +1

Let G be a bipartite graph with positive integer weights on the edges and without isolated nodes. Let n, N and W be the node count, the largest edge weight and the total weight of…