3 citations · 6 across the 3 of their papers we have counts for
3 papers
cs.DC2024★ 3 cited
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
Yifan Li, Giulia Guidi
In generating large quantities of DNA data, high-throughput sequencing technologies require advanced bioinformatics infrastructures for efficient data analysis. k-mer counting, the…
cs.DC2023
Space Efficient Sequence Alignment for SRAM-Based Computing: X-Drop on the Graphcore IPU
Luk Burchard, Max Xiaohang Zhao, Johannes Langguth +2
Dedicated accelerator hardware has become essential for processing AI-based workloads, leading to the rise of novel accelerator architectures. Furthermore, fundamental differences…
cs.DC2022★ 3 cited
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly
Giulia Guidi, Gabriel Raulet, Daniel Rokhsar +3
De novo genome assembly, i.e., rebuilding the sequence of an unknown genome from redundant and erroneous short sequences, is a key but computationally intensive step in many genomi…