3 papers
cs.CL2025
Mapping Biomedical Ontology Terms to IDs: Effect of Domain Prevalence on Prediction Accuracy
Thanh Son Do, Daniel B. Hier, Tayo Obafemi-Ajayi
This study evaluates the ability of large language models (LLMs) to map biomedical ontology terms to their corresponding ontology IDs across the Human Phenotype Ontology (HPO), Gen…
cs.CL2025
A Simplified Retriever to Improve Accuracy of Phenotype Normalizations by Large Language Models
Daniel B. Hier, Thanh Son Do, Tayo Obafemi-Ajayi
Large language models (LLMs) have shown improved accuracy in phenotype term normalization tasks when augmented with retrievers that suggest candidate normalizations based on term d…
cs.CL2024
Efficient Standardization of Clinical Notes using Large Language Models
Daniel B. Hier, Michael D. Carrithers, Thanh Son Do +1
Clinician notes are a rich source of patient information but often contain inconsistencies due to varied writing styles, colloquialisms, abbreviations, medical jargon, grammatical…