34 citations · 88 across the 5 of their papers we have counts for
5 papers
cgNA+min: computation of sequence-dependent dsDNA energy-minimising minicircle configurations
Raushan Singh, Jaroslaw Glowacki, Marius Beaud +3
DNA minicircles are closed double-stranded DNA (dsDNA) fragments that have been demonstrated to be an important experimental tool to understand supercoiled, or stressed, DNA mechan…
The shapes of physical trefoil knots
Paul Johanns, Paul Grandgeorge, Changyeob Baek +3
We perform a compare-and-contrast investigation between the equilibrium shapes of physical and ideal trefoil knots, both in closed and open configurations. Ideal knots are purely g…
Mechanics of two filaments in tight contact: The orthogonal clasp
Paul Grandgeorge, Changyeob Baek, Harmeet Singh +5
Networks of flexible filaments often involve regions of tight contact. Predictively understanding the equilibrium configurations of these systems is challenging due to intricate co…
Structural motifs of biomolecules
Jayanth R. Banavar, Trinh X. Hoang, John H. Maddocks +4
Biomolecular structures are assemblies of emergent anisotropic building modules such as uniaxial helices or biaxial strands. We provide an approach to understanding a marginally co…
Self-interactions of strands and sheets
J. R. Banavar, O. Gonzalez, J. H. Maddocks +1
Physical strands or sheets that can be modelled as curves or surfaces embedded in three dimensions are ubiquitous in nature, and are of fundamental importance in mathematics, physi…