5 papers
Deep Learning and Explainable AI: New Pathways to Genetic Insights
Chenyu Wang, Chaoying Zuo, Zihan Su +4
Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an…
Self-Explainable Graph Transformer for Link Sign Prediction
Lu Li, Jiale Liu, Xingyu Ji +2
Signed Graph Neural Networks (SGNNs) have been shown to be effective in analyzing complex patterns in real-world situations where positive and negative links coexist. However, SGNN…
CSGDN: Contrastive Signed Graph Diffusion Network for Predicting Crop Gene-phenotype Associations
Yiru Pan, Xingyu Ji, Jiaqi You +5
Positive and negative association prediction between gene and phenotype helps to illustrate the underlying mechanism of complex traits in organisms. The transcription and regulatio…
Verbalized Graph Representation Learning: A Fully Interpretable Graph Model Based on Large Language Models Throughout the Entire Process
Xingyu Ji, Jiale Liu, Lu Li +2
Representation learning on text-attributed graphs (TAGs) has attracted significant interest due to its wide-ranging real-world applications, particularly through Graph Neural Netwo…
DropEdge not Foolproof: Effective Augmentation Method for Signed Graph Neural Networks
Zeyu Zhang, Lu Li, Shuyan Wan +5
The paper discusses signed graphs, which model friendly or antagonistic relationships using edges marked with positive or negative signs, focusing on the task of link sign predicti…