2 papers
cs.LG2025
Flash Invariant Point Attention
Andrew Liu, Axel Elaldi, Nicholas T Franklin +4
Invariant Point Attention (IPA) is a key algorithm for geometry-aware modeling in structural biology, central to many protein and RNA models. However, its quadratic complexity limi…
cs.LG2025
Bio2Token: All-atom tokenization of any biomolecular structure with Mamba
Andrew Liu, Axel Elaldi, Nathan Russell +1
Efficient encoding and representation of large 3D molecular structures with high fidelity is critical for biomolecular design applications. Despite this, many representation learni…