4.2k citations · 5.1k across the 27 of their papers we have counts for
27 papers
The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learning
Akis Linardos, Sarthak Pati, Ujjwal Baid +25
We present the design and results of the MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024, which focuses on federated learning (FL) for glioma sub-region segmentation in m…
BrainLesion Suite: A Flexible and User-Friendly Framework for Modular Brain Lesion Image Analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +26
BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provi…
BraTS orchestrator : Democratizing and Disseminating state-of-the-art brain tumor image analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +34
The Brain Tumor Segmentation (BraTS) cluster of challenges has significantly advanced brain tumor image analysis by providing large, curated datasets and addressing clinically rele…
Inclusive Federated Learning Through Compliance-Weighted Noise Allocation in Healthcare AI
Santhosh Parampottupadam, Melih Coşğun, Sarthak Pati +7
Background: Federated learning (FL) enables collaborative training of clinical AI models without centralizing patient data, but adoption is limited by privacy concerns, heterogeneo…
Analysis of the MICCAI Brain Tumor Segmentation -- Metastases (BraTS-METS) 2025 Lighthouse Challenge: Brain Metastasis Segmentation on Pre- and Post-treatment MRI
Nazanin Maleki, Raisa Amiruddin, Ahmed W. Moawad +240
Despite continuous advancements in cancer treatment, brain metastatic disease remains a significant complication of primary cancer and is associated with an unfavorable prognosis.…
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical Imaging
Sarthak Pati, Szymon Mazurek, Spyridon Bakas
Generative Artificial Intelligence (GenAI) is a field of AI that creates new data samples from existing ones. It utilizing deep learning to overcome the scarcity and regulatory con…
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu +77
Pediatric central nervous system tumors are the leading cause of cancer-related deaths in children. The five-year survival rate for high-grade glioma in children is less than 20%.…
BraTS-Path Challenge: Assessing Heterogeneous Histopathologic Brain Tumor Sub-regions
Spyridon Bakas, Siddhesh P. Thakur, Shahriar Faghani +19
Glioblastoma is the most common primary adult brain tumor, with a grim prognosis - median survival of 12-18 months following treatment, and 4 months otherwise. Glioblastoma is wide…
Analysis of the 2024 BraTS Meningioma Radiotherapy Planning Automated Segmentation Challenge
Dominic LaBella, Valeriia Abramova, Mehdi Astaraki +102
The 2024 Brain Tumor Segmentation Meningioma Radiotherapy (BraTS-MEN-RT) challenge aimed to advance automated segmentation algorithms using the largest known multi-institutional da…
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge
Dominic LaBella, Ujjwal Baid, Omaditya Khanna +119
We describe the design and results from the BraTS 2023 Intracranial Meningioma Segmentation Challenge. The BraTS Meningioma Challenge differed from prior BraTS Glioma challenges in…
Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps
Florian Kofler, Hendrik Möller, Josef A. Buchner +18
This paper introduces panoptica, a versatile and performance-optimized package designed for computing instance-wise segmentation quality metrics from 2D and 3D segmentation maps. p…
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?
Awan Afiaz, Andrey Ivanov, John Chamberlin +24
Software is vital for the advancement of biology and medicine. Analysis of usage and impact metrics can help developers determine user and community engagement, justify additional…
DENTEX: Dental Enumeration and Tooth Pathosis Detection Benchmark for Panoramic X-ray
Ibrahim Ethem Hamamci, Sezgin Er, Omer Faruk Durugol +40
Panoramic X-rays are frequently used in dentistry for treatment planning, but their interpretation can be both time-consuming and prone to error. Artificial intelligence (AI) has t…
GenerateCT: Text-Conditional Generation of 3D Chest CT Volumes
Ibrahim Ethem Hamamci, Sezgin Er, Anjany Sekuboyina +13
GenerateCT, the first approach to generating 3D medical imaging conditioned on free-form medical text prompts, incorporates a text encoder and three key components: a novel causal…
The Brain Tumor Segmentation (BraTS) Challenge: Local Synthesis of Healthy Brain Tissue via Inpainting
Florian Kofler, Felix Meissen, Felix Steinbauer +103
A myriad of algorithms for the automatic analysis of brain MR images is available to support clinicians in their decision-making. For brain tumor patients, the image acquisition ti…
Why is the winner the best?
Matthias Eisenmann, Annika Reinke, Vivienn Weru +122
International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to in…
Biomedical image analysis competitions: The state of current participation practice
Matthias Eisenmann, Annika Reinke, Vivienn Weru +352
The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known abou…
MammoFL: Mammographic Breast Density Estimation using Federated Learning
Ramya Muthukrishnan, Angelina Heyler, Keshava Katti +11
In this study, we automate quantitative mammographic breast density estimation with neural networks and show that this tool is a strong use case for federated learning on multi-ins…
Federated Learning Enables Big Data for Rare Cancer Boundary Detection
Sarthak Pati, Ujjwal Baid, Brandon Edwards +276
Although machine learning (ML) has shown promise in numerous domains, there are concerns about generalizability to out-of-sample data. This is currently addressed by centrally shar…
Federated Learning for the Classification of Tumor Infiltrating Lymphocytes
Ujjwal Baid, Sarthak Pati, Tahsin M. Kurc +6
We evaluate the performance of federated learning (FL) in developing deep learning models for analysis of digitized tissue sections. A classification application was considered as…
MedPerf: Open Benchmarking Platform for Medical Artificial Intelligence using Federated Evaluation
Alexandros Karargyris, Renato Umeton, Micah J. Sheller +39
Medical AI has tremendous potential to advance healthcare by supporting the evidence-based practice of medicine, personalizing patient treatment, reducing costs, and improving prov…
The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification
Ujjwal Baid, Satyam Ghodasara, Suyash Mohan +100
The BraTS 2021 challenge celebrates its 10th anniversary and is jointly organized by the Radiological Society of North America (RSNA), the American Society of Neuroradiology (ASNR)…
The Federated Tumor Segmentation (FeTS) Challenge
Sarthak Pati, Ujjwal Baid, Maximilian Zenk +29
This manuscript describes the first challenge on Federated Learning, namely the Federated Tumor Segmentation (FeTS) challenge 2021. International challenges have become the standar…
OpenFL: An open-source framework for Federated Learning
G Anthony Reina, Alexey Gruzdev, Patrick Foley +15
Federated learning (FL) is a computational paradigm that enables organizations to collaborate on machine learning (ML) projects without sharing sensitive data, such as, patient rec…