75 citations · 97 across the 8 of their papers we have counts for
10 papers
Exact current blockade maps of dsDNA bound motifs driven through a solitary nanopore using electrokinetic Brownian dynamics
Swarnadeep Seth, Aniket Bhattacharya
We report current blockade (CB) characteristics of molecular motifs residing on a model dsDNA using electrokinetic Brownian dynamics (EKBD) and study the role of the valence of the…
Fine structures of Intrinsically Disordered Proteins
Swarnadeep Seth, Brandon Stine, Aniket Bhattacharya
We report simulation studies of 33 single intrinsically disordered proteins (IDPs) using coarse-grained (CG) bead-spring models where interactions among different amino acids are i…
Universality in conformations and transverse fluctuations of a semi-flexible polymer in a crowded environment
Jacob Bair, Swarnadeep Seth, Aniket Bhattacharya
We study universal aspects of polymer conformations and transverse fluctuations for a single swollen chain characterized by a contour length and a persistence length i…
Discriminating protein tags on dsDNA constructs using a dual Nanopore device
Swarnadeep Seth, Arthur Rand, Walter Reisner +3
We report a novel simulation strategy that enables us to identify key parameters controlling the experimentally measurable characteristics of structural protein tags on dsDNA const…
How capture affects polymer translocation in a solitary nanopore
Swarnadeep Seth, Aniket Bhattacharya
DNA capture with high fidelity is an essential part of nanopore translocation. We report several important aspects of the capture process and subsequent translocation of a model DN…
DNA Barcodes using a Double Nanopore System
Swarnadeep Seth, Aniket Bhattacharya
The potential of a double nanopore system to determine DNA barcodes has been demonstrated experimentally. By carrying out Brownian dynamics simulation on a coarse-grained model DNA…