39 citations · 43 across the 4 of their papers we have counts for
5 papers
An Open-Source Knowledge Graph Ecosystem for the Life Sciences
Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski +29
Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these…
Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions
Sanya B. Taneja, Tiffany J. Callahan, Mary F. Paine +4
Pharmacokinetic natural product-drug interactions (NPDIs) occur when botanical natural products are co-consumed with pharmaceutical drugs. Understanding mechanisms of NPDIs is key…
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality
Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa +29
Background: Common data models solve many challenges of standardizing electronic health record (EHR) data, but are unable to semantically integrate all the resources needed for dee…
Introducing Information Retrieval for Biomedical Informatics Students
Sanya B. Taneja, Richard D. Boyce, William T. Reynolds +1
Introducing biomedical informatics (BMI) students to natural language processing (NLP) requires balancing technical depth with practical know-how to address application-focused nee…
Fine-grained Entity Recognition with Reduced False Negatives and Large Type Coverage
Abhishek Abhishek, Sanya Bathla Taneja, Garima Malik +2
Fine-grained Entity Recognition (FgER) is the task of detecting and classifying entity mentions to a large set of types spanning diverse domains such as biomedical, finance and spo…