4 citations · 5 across the 8 of their papers we have counts for
9 papers
The microscope is the mask: privileged views and labels from a cryo-ET forward model
Bogdan Toader, Kiarash Jamali, Tanmay A. M. Bharat +1
We explore the use of simulated data for training a model for protein annotation in crowded cryo-electron tomography volumes reconstructed from images collected at limited tilt ang…
Efficient high-resolution refinement in cryo-EM with stochastic gradient descent
Bogdan Toader, Marcus A. Brubaker, Roy R. Lederman
Electron cryomicroscopy (cryo-EM) is an imaging technique widely used in structural biology to determine the three-dimensional structure of biological molecules from noisy two-dime…
On Manifold Learning in Plato's Cave: Remarks on Manifold Learning and Physical Phenomena
Roy R. Lederman, Bogdan Toader
Many techniques in machine learning attempt explicitly or implicitly to infer a low-dimensional manifold structure of an underlying physical phenomenon from measurements without an…
Methods for Cryo-EM Single Particle Reconstruction of Macromolecules having Continuous Heterogeneity
Bogdan Toader, Fred J. Sigworth, Roy R. Lederman
Macromolecules change their shape (conformation) in the process of carrying out their functions. The imaging by cryo-electron microscopy of rapidly-frozen, individual copies of mac…
Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mixture models
Muyuan Chen, Bogdan Toader, Roy Lederman
Resolving the structural variability of proteins is often key to understanding the structure-function relationship of those macromolecular machines. Single particle analysis using…
The dual approach to non-negative super-resolution: perturbation analysis and data fidelity
Stéphane Chrétien, Andrew Thompson, Bogdan Toader
We study the problem of super-resolution, where we recover the locations and weights of non-negative point sources from (potentially noisy) samples of their convolution with a Gaus…
The dual approach to non-negative super-resolution: impact on primal reconstruction accuracy
Stephane Chretien, Andrew Thompson, Bogdan Toader
We study the problem of super-resolution, where we recover the locations and weights of non-negative point sources from a few samples of their convolution with a Gaussian kernel. I…
Sparse non-negative super-resolution -- simplified and stabilised
Armin Eftekhari, Jared Tanner, Andrew Thompson +2
The convolution of a discrete measure, , with a local window function, , is a common model for a measurement device whose resolution is substantia…
On the dimension of the space of integrals on coalgebras
S. Dăscălescu, C. Năstăsescu, B. Toader
We study the injective envelopes of the simple right -comodules, and their duals, where is a coalgebra. This is used to give a short proof and to extend a result of Iovanov…