3 papers
cond-mat.stat-mech2026
Ultrametric organization of energy landscapes on random ErdÅs--Rényi graphs: topological origin of barrier hierarchy
A. P. Zubarev
In the present work, we investigate the hypothesis of the ultrametric organization of abstract energy landscapes defined on random ErdÅs--Rényi graphs. Within the proposed model,…
cond-mat.dis-nn2026
Kinetic metric for basins of attraction of RNA secondary structures and analysis of the ultrametricity of the energy landscape
A. P. Zubarev
A method for testing the hypothesis of an ultrametric organization of the energy landscape of RNA secondary structures is proposed, based on the analysis of the kinetics of transit…
cond-mat.dis-nn2026
Ultrametricity of Energy Minimum Configurations of RNA Secondary Structures in the Nussinov Model
A. P. Zubarev
We present a numerical study of the ultrametric properties of the set of RNA secondary structures with the maximum number of base pairs (energetically degenerate minima) within the…