90 citations · 253 across the 5 of their papers we have counts for
5 papers
Predicting 3D structure and stability of RNA pseudoknots in monovalent and divalent ion solutions
Ya-Zhou Shi, Lei Jin, Chen-Jie Feng +2
RNA pseudoknots are a kind of minimal RNA tertiary structural motifs, and their three-dimensional (3D) structures and stability play essential roles in a variety of biological func…
Potential of mean force between like-charged nanoparticles: Many-body effect
Xi Zhang, Jin-Si Zhang, Ya-Zhou Shi +2
Ion-mediated interaction is important for the properties of polyelectrolytes such as colloids and nucleic acids. The effective pair interactions between two polyelectrolytes have b…
Predicting 3D structure, flexibility and stability of RNA hairpins in monovalent and divalent ion solutions
Ya-Zhou Shi, Lei Jin, Feng-Hua Wang +2
A full understanding of RNA-mediated biology would require the knowledge of three-dimensional (3D) structures, structural flexibility and stability of RNAs. To predict RNA 3D struc…
A coarse-grained model with implicit salt for RNAs: predicting 3D structure, stability and salt effect
Ya-Zhou Shi, Feng-Hua Wang, Yuan-Yan Wu +1
To bridge the gap between the sequences and 3-dimensional (3D) structures of RNAs, some computational models have been proposed for predicting RNA 3D structures. However, the exist…
RNA structure prediction: progress and perspective
Ya-Zhou Shi, Yuan-Yan Wu, Feng-Hua Wang +1
Many recent exciting discoveries have revealed the versatility of RNAs and their importance in a variety of cellular functions which are strongly coupled to RNA structures. To unde…