2 papers
q-bio.PE2020
Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction
Mandev S. Gill, Philippe Lemey, Marc A. Suchard +2
Reconstructing pathogen dynamics from genetic data as they become available during an outbreak or epidemic represents an important statistical scenario in which observations arrive…
q-bio.PE2019
Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation
Guy Baele, Mandev S. Gill, Philippe Lemey +1
Markov models of character substitution on phylogenies form the foundation of phylogenetic inference frameworks. Early models made the simplifying assumption that the substitution…