103 citations · 175 across the 5 of their papers we have counts for
5 papers
A cross-study analysis of drug response prediction in cancer cell lines
Fangfang Xia, Jonathan Allen, Prasanna Balaprakash +21
To enable personalized cancer treatment, machine learning models have been developed to predict drug response as a function of tumor and drug features. However, most algorithm deve…
Evidence for a multi-level trophic organization of the human gut microbiome
Tong Wang, Akshit Goyal, Veronika Dubinkina +1
The human gut microbiome is a complex ecosystem, in which hundreds of microbial species and metabolites coexist, in part due to an extensive network of cross-feeding interactions.…
Multistability and regime shifts in microbial communities explained by competition for essential nutrients
Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey +1
Microbial communities routinely have several possible species compositions or community states observed for the same environmental parameters. Changes in these parameters can trigg…
Alternative stable states in a model of microbial community limited by multiple essential nutrients
Veronika Dubinkina, Yulia Fridman, Parth Pandey +1
Microbial communities routinely have several alternative stable states observed for the same environmental parameters. Sudden and irreversible transitions between these states make…
Multiple stable states in microbial communities explained by the stable marriage problem
Akshit Goyal, Veronika Dubinkina, Sergei Maslov
Experimental studies of microbial communities routinely reveal that they have multiple stable states. While each of these states is generally resilient, certain perturbations such…