activity
20182023
most citedPublicly Available Clinical BERT Embeddings

732 citations · 1.3k across the 23 of their papers we have counts for

collaborators
Showing 2019Show all

8 papers · 1 filter

eess.AS2019★ 3 cited

Cross-Language Aphasia Detection using Optimal Transport Domain Adaptation

Aparna Balagopalan, Jekaterina Novikova, Matthew B. A. McDermott +3

Multi-language speech datasets are scarce and often have small sample sizes in the medical domain. Robust transfer of linguistic features across languages could improve rates of ea…

q-bio.QM2019

Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles

Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering +2

Modeling the relationship between chemical structure and molecular activity is a key goal in drug development. Many benchmark tasks have been proposed for molecular property predic…

cs.LG2019★ 73 cited

Feature Robustness in Non-stationary Health Records: Caveats to Deployable Model Performance in Common Clinical Machine Learning Tasks

Bret Nestor, Matthew B. A. McDermott, Willie Boag +5

When training clinical prediction models from electronic health records (EHRs), a key concern should be a model's ability to sustain performance over time when deployed, even as ca…

cs.CL2019

REflex: Flexible Framework for Relation Extraction in Multiple Domains

Geeticka Chauhan, Matthew B. A. McDermott, Peter Szolovits

Systematic comparison of methods for relation extraction (RE) is difficult because many experiments in the field are not described precisely enough to be completely reproducible an…

cs.LG2019★ 30 cited

Reproducibility in Machine Learning for Health

Matthew B. A. McDermott, Shirly Wang, Nikki Marinsek +3

Machine learning algorithms designed to characterize, monitor, and intervene on human health (ML4H) are expected to perform safely and reliably when operating at scale, potentially…

cs.LG2019★ 150 cited

MIMIC-Extract: A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III

Shirly Wang, Matthew B. A. McDermott, Geeticka Chauhan +3

Robust machine learning relies on access to data that can be used with standardized frameworks in important tasks and the ability to develop models whose performance can be reasona…