20 citations · 40 across the 19 of their papers we have counts for
5 papers · 1 filter
Combining Networks using Cherry Picking Sequences
Remie Janssen, Mark Jones, Yukihiro Murakami
Phylogenetic networks are important for the study of evolution. The number of methods to find such networks is increasing, but most such methods can only reconstruct small networks…
Cutting an alignment with Ockham's razor
Mark Jones, Philippe Gambette, Leo van Iersel +4
In this article, we investigate different parsimony-based approaches towards finding recombination breakpoints in a multiple sequence alignment. This recombination detection task i…
A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees
Leo van Iersel, Remie Janssen, Mark Jones +2
We present the first fixed-parameter algorithm for constructing a tree-child phylogenetic network that displays an arbitrary number of binary input trees and has the minimum number…
Orienting undirected phylogenetic networks
Katharina T. Huber, Leo van Iersel, Remie Janssen +4
This paper studies the relationship between undirected (unrooted) and directed (rooted) phylogenetic networks. We describe a polynomial-time algorithm for deciding whether an undir…
Rearrangement operations on unrooted phylogenetic networks
Remie Janssen, Jonathan Klawitter
Rearrangement operations transform a phylogenetic tree into another one and hence induce a metric on the space of phylogenetic trees. Popular operations for unrooted phylogenetic t…